Well, I certainly know what it's like to be trying to make heads or tails of all this when you're first starting out. It all seems quite confusing. But trust me, once you get some of the basic concepts down and understand what the code is doing, it will all start to make a lovely sort of sense.
A good resource to learn the very basics of Javascript is
http://www.w3schools.com/js/
It seems to be talking mostly about web javascript, which is a little different than what we're doing with javascript in Unity, but it's a good gateway to understanding the language. ( You'll find as you go along that many of the most basic things in programming are pretty much the same whether you're talking Javascipt, C#, Objective C, etc, etc...)
Also, another place where I really learned a ton was from Will Goldstone's Unity Student site (http://www.unity3dstudent.com/). Goldstone is like the patron saint of the beginning Unity learner and you'll learn most of the basics of making a Unity game by going through the *really* amazing videos on his site.
Of course, Unity's own script reference site (http://unity3d.com/support/documentation/ScriptReference/) is absolutely invaluable. I did find it sort of hard to figure out when I was first trying to learn all this stuff, but now I go there almost every single day, and I'm always amazed to find the one more thing that I didn't know I didn't know.
Good luck!
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